FastQCFastQC Report
Wed 27 Apr 2022
EGAF00004949177

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949177
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3035542
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGAA295344897.29557357466969No Hit
ACCGCGAA169230.5574951689022916No Hit
AACGCCAA89790.29579561080031175No Hit
AACGCAAA73070.24071483774561508No Hit
AACCCGAA71590.23583926692498408No Hit
AACGAGAA58210.1917614712627926No Hit
AAAGCGAA42360.13954674321752095No Hit
AACGCGAT36260.11945148510546057No Hit
AACGCTAA33080.1089755964503209No Hit
AACTCGAA32620.10746021633039503No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)