FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949180

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949180
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3035542
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA84850.2795217460341514No Hit
GGGGGGGGGGGGGGGG75200.24773170656179358No Hit
GGACACCTGGCTCCTT73900.24344911057069873No Hit
GTTAAGAGAGTACGTT57150.18826950837774603No Hit
CGCTTACTGATCACAC53100.17492757471318138No Hit
ATCTTACTGGTTTGGT50810.1673836171596374No Hit
TACCAGTGATACGATC50580.16662592709967447No Hit
TTGTGGTGAAAGACAT49780.1639904834128469No Hit
ATAGATGGAGAGTAAT47700.15713832982709514No Hit
ATTCCTAACTGCGTGC46440.15298750602034167No Hit
ATATGCCGAGAACAGC45580.150154404057002No Hit
TGGAACACTTGAGGCA42770.1408974081070201No Hit
CTTGACGCTCAGGGTA40480.1333534505534761No Hit
CTTTCTGCTCTTGTGA40160.1322992730787451No Hit
GCGGTTCGAAGCAAGC38850.1279837340415649No Hit
AGCTCTGCTGGCCTGT38550.12699544265900456No Hit
ACTGGAACTCTGGAAG37520.12360230891221403No Hit
AGGTAGCGATTGACCA37000.1218892705157761No Hit
TGTGACTGACCGTTAA36130.1190232255063511No Hit
TGTACCCTGCTGAGAG34840.11477357256134159No Hit
ACCCTTTCTAGGTGAC34040.112138128874514No Hit
GCTATACGACAGGTGA33770.1112486666302097No Hit
AGTTCACGACCAGAGA33710.11105100835369763No Hit
ACGCTCTTGCCTCAAA32990.10867910903555279No Hit
TTCCAAACTCCGCTAG32830.10815202029818727No Hit
ACATGTGTGTCAATGC32630.10749315937648037No Hit
TCAGTCCACCCAGCAC32550.10722961500779762No Hit
TCCCAGACTCCTAACA31700.10442945609054331No Hit
ACACTCCACCGTACAT31290.10307879120104416No Hit
CAGTGGAGAGATCATC31150.10261758855584933No Hit
CACAGCTCTCTCTGGG30380.10008097400727779No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)