FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004949188

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949188
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16668261
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTCAGAC1639957398.38802620141357No Hit
ACTCAGCC691350.414770323070895No Hit
ACACAGAC429950.25794532495021527No Hit
ACTCAGAA298380.1790108758196191No Hit
ACTCACAC175160.10508594747826423No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)