FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949192

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949192
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5287327
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTATCCC514161597.24412732558436No Hit
TTTATCCA426790.807194259027293No Hit
TTTAACCC149740.2832054836025841No Hit
ATTATCCC136960.25903447999338797No Hit
TTTATACC121130.22909496613317087No Hit
TATATCCC115210.217898382301681No Hit
TTAATCCC89830.16989681175384083No Hit
TTTTTCCC78680.14880865132797727No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)