FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004949202

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949202
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17270009
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCAAGG1696469298.23209704175603No Hit
ATCCAAGA520050.3011289687225988No Hit
AACCAAGG386470.22378100671516735No Hit
ATCCAACG308270.1785001964967129No Hit
ATCCAAGC266100.15408214321139035No Hit
ATACAAGG248900.14412268111730572No Hit
ATCAAAGG204430.11837283929614628No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)