FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004949209

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949209
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15124563
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGAAGCTC1489988898.51450253471786No Hit
GGAAGCTA446000.2948845530280776No Hit
GGCAGCTC329090.21758645191930506No Hit
GGAAGCAC195580.12931282708796282No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)