FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949227

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949227
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9071432
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG884814997.53861352871299No Hit
GCTATTAG578360.6375619637561082No Hit
ACTATTAG325400.3587085258424469No Hit
TCTATTAA187490.20668181164781924No Hit
TCTAATAG170780.18826134616894002No Hit
TCAATTAG160720.17717158658081766No Hit
TCTTTTAG146890.16192592305161962No Hit
TATATTAG127860.14094797822438618No Hit
TCTATAAG101420.11180153254745227No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)