FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949231

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949231
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2766070
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG269811997.5434099643176No Hit
CTATTTGA201520.7285426616101545No Hit
CTTTTTGG49750.17985806577563113No Hit
CGATTTGG45020.1627579923863098No Hit
CTAATTGG36980.1336914828619666No Hit
CTATTTTG36700.13267921636111885No Hit
CTATATGG36280.1311608166098472No Hit
CAATTTGG33760.12205041810221721No Hit
CTAGTTGG31750.11478379072113142No Hit
GTATTTGG28170.10184124046029204No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)