FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949233

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949233
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2766070
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT80890.29243656161991566No Hit
NNNNNNNNNNNNNNNN79730.2882428861164034No Hit
GGGGGGGGGGGGGGGG77150.2789155733585918No Hit
TCGCGGTGAGTCTTGA76060.2749749644802915No Hit
GTTAAGAGAGTACGTT53300.1926921589113797No Hit
CGCTTACTGATCACAC49420.17866503739963197No Hit
ATCTTACTGGTTTGGT43940.15885353588303985No Hit
TACCAGTGATACGATC43370.156792850506314No Hit
ATAGATGGAGAGTAAT42610.1540452700040129No Hit
TTGTGGTGAAAGACAT41820.15118923237662096No Hit
ATTCCTAACTGCGTGC41550.15021311825080347No Hit
ATATGCCGAGAACAGC40320.14576637612207932No Hit
TGGAACACTTGAGGCA38510.13922279624159908No Hit
GCGGTTCGAAGCAAGC38480.13911433911650825No Hit
CTTGACGCTCAGGGTA35940.12993163585881773No Hit
AGGTAGCGATTGACCA35540.12848554085760663No Hit
GCTATACGACAGGTGA35310.12765403623191024No Hit
CTTTCTGCTCTTGTGA34670.12534028422997248No Hit
AGCTCTGCTGGCCTGT34600.12508721760476055No Hit
ACTGGAACTCTGGAAG31960.11554299059676726No Hit
TGTACCCTGCTGAGAG31450.1136992194702231No Hit
TGTGACTGACCGTTAA31420.11359076234513227No Hit
ACGCTCTTGCCTCAAA31270.11304847671967809No Hit
AGTTCACGACCAGAGA30470.1101562867172559No Hit
ACCCTTTCTAGGTGAC29720.10744485858998508No Hit
ACACTCCACCGTACAT29100.10520341133810784No Hit
TTCCAAACTCCGCTAG28700.10375731633689676No Hit
TCAGTCCACCCAGCAC28310.10234737371071592No Hit
CACAGCTCTCTCTGGG28260.10216661183556454No Hit
ACATGTGTGTCAATGC28240.10209430708550397No Hit
TCCCAGACTCCTAACA28180.10187739283532232No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)