FastQCFastQC Report
Sun 11 Sep 2022
EGAF00004949244

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949244
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18575064
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAAGCCAC1816422897.78823911454624No Hit
TAAGCCCC1510030.8129339419772659No Hit
AAAGCCAC561360.3022116101457309No Hit
TAAGCCAA372060.20030079034990136No Hit
TAATCCAC306120.1648015856096108No Hit
TAACCCAC254070.1367801478369065No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)