FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949255

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949255
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2325831
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCAGTG227460897.79764737850687No Hit
CATCAGTA94500.40630639113503947No Hit
CAACAGTG44260.19029757536123648No Hit
CATAAGTG42280.18178448907078804No Hit
CATCAGAG32580.14007896532465172No Hit
CAGCAGTG31710.13633836680309103No Hit
CTTCAGTG26750.1150126556916646No Hit
CATCAGGG26440.11367979874720047No Hit
CATCACTG25320.1088643155930074No Hit
AATCAGTG24770.10649956940121617No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)