FastQCFastQC Report
Sat 23 Apr 2022
EGAF00004949257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3784647
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGCGA368849597.4594195971249No Hit
TCCTGCGA190220.5026096225090477No Hit
TCATGCAA105010.2774631293222327No Hit
TCATGCGC95870.25331292456073184No Hit
TCAAGCGA69040.18242124034289064No Hit
ACATGCGA60580.16006776853957583No Hit
TCATGAGA49410.13055378744701948No Hit
TAATGCGA43010.11364335960526833No Hit
TCATGCCA41610.10994420351488528No Hit
TCATCCGA38090.10064346820192213No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)