FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949261

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949261
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3683603
Sequences flagged as poor quality0
Sequence length16
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA189220.5136818489940419No Hit
CGACCAGACGCGCTGT180670.4904708786478891No Hit
TAGCTTTACCCTATCC169020.45884423484289705No Hit
CCAGGACTGTAACTCG131890.3580461846729954No Hit
ATCTGTACTGGGACTA122970.3338307629785295No Hit
GTTCTCGACCGTAGAG117480.31892687675626286No Hit
CTTCCTTTGGCTCAGC115920.3146918926931051No Hit
CGATCAAACCCGGCTA107200.2910194176734029No Hit
NNNNNNNNNNNNNNNN105860.28738167495248534No Hit
GGGGGGGGGGGGGGGG104090.28257659688082565No Hit
AGACCATTGAATCCAC102860.27923747483102823No Hit
TGCTGCTACTTTCTTG93030.2525516457663869No Hit
GGCAACAGAATAGCAA90890.2467421163464141No Hit
ACAGCCGACTTGCGTA88700.24079685025775033No Hit
GATGAATGACTCCTAC81160.22032776061915466No Hit
AACTTACCTCACCTAA79220.21506117787394569No Hit
CGCGTTGGAGCGGTTC77400.21012036313359503No Hit
ATCGAAAGATTTCCGC75080.20382218170633482No Hit
GTAACTGTGTGAAAGT72190.19597660225599772No Hit
CCCTGAACTAGCTTTG70970.1926646275399385No Hit
AGTGGAGTGAGTTGAA69060.1874794867959441No Hit
CAATTCGGATAACGGG67500.18324450273278636No Hit
GGGTAGAACCAGTCTA63970.1736614939232051No Hit
AAGAACCCTTAACCCA62390.16937221519257098No Hit
TTCCTAAACTAATGCC58970.1600878270541098No Hit
CGCGATCGATATCTGG57860.15707447300917066No Hit
TCCGGGAACGTTCTCC57780.15685729433926512No Hit
TGGAACACTCCTAGTA57280.1554999276523556No Hit
GTGAAGCGATCCCAGG57010.15476694964142443No Hit
TTTAGTCTGAGCAATA55790.1514549749253652No Hit
TGCAGATACTGCCACG55230.14993472423602652No Hit
CTTTAACTGTCCGTAA54250.14727428552968386No Hit
TGATAGAGAGACTGTT53830.14613409751267983No Hit
CACATCCTGAGCCTAT53150.14428807881848288No Hit
AGTCCTGCTCGAACGA51930.14097610410242364No Hit
GCAACTTGAAGGTGCA51710.14037886276018344No Hit
GAGTGTTACACCTGCG51340.13937441141187037No Hit
AGGTGTGGATCATGTG49920.13551949002104732No Hit
TGCAGTATGACACCGC49740.1350308380137599No Hit
CATAGGTACAAGGTGC49550.13451503867273426No Hit
CTATTGGGACTTGTGA49440.13421641800161419No Hit
TCTCAGAGATGCATGT49430.134189270667876No Hit
TACGTTTACTGCACCG49100.1332934086545157No Hit
CTTAGATCTTGTCACA48640.13204463130255892No Hit
TCAAAGCACTCTGCAA48290.13109447462172227No Hit
ATTTCTGACGGGTAGT48140.13068726461564942No Hit
ATGTACGTGTACTTTC47320.12846118324911776No Hit
TGGCAATTGAGTGGTG47060.1277553525719248No Hit
TGAGGGATGTACGTTG46480.12618080721510977No Hit
TGAACTGTGAACGTAA46050.12501347186436756No Hit
AGAGTACCTTAATCGC46010.12490488252941481No Hit
GGTCGCATGGTACTAC45940.12471485119324748No Hit
GGTCTAAACTCCTACC45440.12335748450633796No Hit
TCTATGGGATGCTCAA45040.12227159115681033No Hit
TTCTTAGACGTCCCGA44830.12170149714830832No Hit
CGAGTCTCTGCTACGC44130.11980118378663498No Hit
TCCATTTGAAATCTGC43730.11871529043710737No Hit
GCATGATACTTGCGTA42840.1162991777344084No Hit
GGGTGTGCTCGCAAAG42380.11505040038245164No Hit
CACCAGGTGCGCCACA42210.1145888957089024No Hit
GGGATGTGACTGGAAG42110.11431742237152048No Hit
TACTGTTTGCTTAAGC42010.11404594903413859No Hit
GTAATCTCTACACAAA41780.1134215603581602No Hit
AGACTACTGGCCCTAG41640.11304149768582553No Hit
TCCGGGTGAACACCTA41490.11263428767975267No Hit
CTACAACGAATCTGTG41430.11247140367732353No Hit
TTGCGGTCTTTTGGGT40920.11108688965667582No Hit
CTAGCTCACGAATAGT40590.11019102764331552No Hit
GGCTGACTGAAACTGA40310.10943090229864619No Hit
AGCCAATTGTTATGGC39980.1085350402852859No Hit
TCGGACCGATAGGCGA39930.10839930361659494No Hit
CTTTCGTCTCGAACGA39790.10801924094426028No Hit
CATTCTATGCCTAGCG39510.10725911559959095No Hit
TGTAAGCACGCGCTGT39250.10655328492239799No Hit
CGAGTCTCTTGGAACG39160.10630895891875426No Hit
ACCAAGTTGAAGCTAA38850.10546739157287037No Hit
CACATTACTGATGGAC38630.10487015023063018No Hit
GCCATTCACCGGAAGT38460.10440864555708095No Hit
TGCTAGTGAAGGCGTA38460.10440864555708095No Hit
TGCGCAGACATCAGGG38430.10432720355586637No Hit
ATGTCCAGACCGCTAG38090.10340419420876788No Hit
GGGCCTTGACTATCTT38060.1033227522075533No Hit
CATAGTCGAAGATTCC38050.10329560487381512No Hit
TAGTACCGAACGAGCA37510.10182964885195284No Hit
CTAACAGTGCATGATC37350.10139529151214177No Hit
AGGCGATGACCTGCGA37000.10044513483130511No Hit
ATAGCCAACCGTTCTC36900.10017366149392319No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)