FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949265

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949265
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4726753
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGAGC459985697.31534522747434No Hit
GGTCGCGC424280.897614070377699No Hit
GGTCGAGA107680.22780966130449382No Hit
GGTCGACC88670.18759177811914438No Hit
GGACGAGC83830.177352190816825No Hit
GGTCCAGC81420.17225355333777753No Hit
GGTAGAGC75500.15972909944733732No Hit
CGTCGAGC58380.12350973279119937No Hit
GCTCGAGC50490.10681751299464982No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)