FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949267

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949267
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7156760
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAACCATC698530097.60422314008015No Hit
CAACCATA365660.5109295267690966No Hit
CCACCATC229990.3213605039151795No Hit
AAACCATC208710.291626378417049No Hit
CAACCAAC175280.24491529686617966No Hit
CACCCATC103850.14510756264007735No Hit
CAACCCTC99650.13923898523913056No Hit
CAACAATC93100.13008679905432066RNA PCR Primer, Index 36 (100% over 8bp)
CAAACATC87190.12182887228298839No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)