FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949272

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949272
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3971571
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGCGA384324196.76878494681324No Hit
TCCTGCGA312250.7862128110009867No Hit
TCATGCGC136190.3429121624666914No Hit
TCATGCAA105910.26667029243591517No Hit
TCAAGCGA91830.2312183264506665No Hit
ACATGCGA74450.1874573059376252No Hit
TCATCCGA70120.17655481923903665No Hit
TCATGCCA66360.16708753286797592No Hit
TCATGAGA60120.15137586612451345No Hit
TAATGCGA56440.1421100113783689No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)