FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949273

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949273
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3790358
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGAGCA370118097.64724070918895No Hit
GTGGCGCA173300.45721274876937745No Hit
GGGGAGCA101280.2672043115716246No Hit
GTGGAGCT65060.1716460555968592No Hit
GAGGAGCA60480.15956276425604124No Hit
GTGGAGCC59760.15766320753870744No Hit
GTGGAGAA56220.14832372034514946No Hit
GTGGTGCA45280.11946101133454941No Hit
GTGCAGCA44540.11750868915284518No Hit
GTGGGGCA38620.10189011169921153No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)