FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949276

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949276
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3971571
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA205710.5179562445188566No Hit
CGACCAGACGCGCTGT194490.48970545912436164No Hit
TAGCTTTACCCTATCC182520.4595662522462774No Hit
CCAGGACTGTAACTCG141290.35575342855509823No Hit
ATCTGTACTGGGACTA132980.33482971851692944No Hit
CTTCCTTTGGCTCAGC123140.3100536286522386No Hit
GTTCTCGACCGTAGAG121610.3062012488257166No Hit
CGATCAAACCCGGCTA115520.290867266378972No Hit
AGACCATTGAATCCAC104750.26374953387463046No Hit
GGGGGGGGGGGGGGGG101790.2562965637527316No Hit
TGCTGCTACTTTCTTG99070.2494478885055813No Hit
GGCAACAGAATAGCAA98630.24834001456854227No Hit
ACAGCCGACTTGCGTA92800.23366068490277525No Hit
AACTTACCTCACCTAA86240.21714329165964802No Hit
CGCGTTGGAGCGGTTC80560.20284164629059886No Hit
ATCGAAAGATTTCCGC80320.2022373514158503No Hit
CCCTGAACTAGCTTTG77760.19579153941853233No Hit
GTAACTGTGTGAAAGT76480.1925686334198734No Hit
AGTGGAGTGAGTTGAA74100.18657604257861687No Hit
CAATTCGGATAACGGG71480.1799791568626118No Hit
GGGTAGAACCAGTCTA69120.17403692392758432No Hit
AAGAACCCTTAACCCA65350.16454445860340908No Hit
TTCCTAAACTAATGCC64350.16202656329195675No Hit
CGCGATCGATATCTGG63630.16021367866771108No Hit
TTTAGTCTGAGCAATA62860.1582748992778928No Hit
TCCGGGAACGTTCTCC62010.15613468826315835No Hit
TGGAACACTCCTAGTA60710.15286142435827033No Hit
TGCAGATACTGCCACG59980.1510233607809101No Hit
GTGAAGCGATCCCAGG59630.1501420974219018No Hit
GATGAATGACTCCTAC59320.14936154987535158No Hit
CTTTAACTGTCCGTAA56950.1433941379872096No Hit
AGTCCTGCTCGAACGA56670.14268912730000294No Hit
TGATAGAGAGACTGTT56570.1424373377688577No Hit
CACATCCTGAGCCTAT56360.14190857975345272No Hit
GCAACTTGAAGGTGCA55860.14064963209772657No Hit
TGCAGTATGACACCGC54350.13684761017743358No Hit
AGGTGTGGATCATGTG53830.13553830461547836No Hit
TCTCAGAGATGCATGT53320.13425417800663766No Hit
CTATTGGGACTTGTGA53170.13387649370991983No Hit
CATAGGTACAAGGTGC53110.1337254199912327No Hit
CTTAGATCTTGTCACA52170.1313585983984675No Hit
TACGTTTACTGCACCG52120.13123270363289488No Hit
GAGTGTTACACCTGCG51950.130804661429948No Hit
TCAAAGCACTCTGCAA51840.13052769294568825No Hit
ATTTCTGACGGGTAGT51390.1293946400555347No Hit
TGGCAATTGAGTGGTG51120.12871480832144258No Hit
TGAACTGTGAACGTAA50600.12740550275948737No Hit
ATGTACGTGTACTTTC50070.12607101824441766No Hit
NNNNNNNNNNNNNNNN49950.12576887080704335No Hit
TGAGGGATGTACGTTG49850.12551708127589814No Hit
AGAGTACCTTAATCGC49700.12513939697918028No Hit
TTCTTAGACGTCCCGA48820.12292364910510224No Hit
TCTATGGGATGCTCAA48590.1223445331834682No Hit
GGGTGTGCTCGCAAAG48060.12101004866839847No Hit
GGTCTAAACTCCTACC47810.12038057484053541No Hit
CGAGTCTCTGCTACGC47590.11982663787201589No Hit
TACTGTTTGCTTAAGC47200.11884465870054949No Hit
GGTCGCATGGTACTAC47120.1186432270756333No Hit
GGGATGTGACTGGAAG46880.11803893220088474No Hit
GCATGATACTTGCGTA46450.11695623721696025No Hit
TCCATTTGAAATCTGC46150.11620086862352455No Hit
CACCAGGTGCGCCACA44620.11234848879700249No Hit
GTAATCTCTACACAAA44510.11207152031274274No Hit
CTACAACGAATCTGTG43880.11048524626652778No Hit
CATTCTATGCCTAGCG43870.11046006731341325No Hit
AGACTACTGGCCCTAG43730.11010756196980992No Hit
GGCTGACTGAAACTGA43610.10980541453243566No Hit
TCCGGGTGAACACCTA43360.10917594070457258No Hit
CTAGCTCACGAATAGT43260.10892415117342734No Hit
CTTTCGTCTCGAACGA43050.10839539315802235No Hit
TCGGACCGATAGGCGA43010.10829467734556426No Hit
TTGCGGTCTTTTGGGT42660.10741341398655595No Hit
AGCCAATTGTTATGGC42620.10731269817409786No Hit
TGCTAGTGAAGGCGTA42220.10630554004951694No Hit
CGAGTCTCTTGGAACG41800.10524802401870696No Hit
ACCAAGTTGAAGCTAA41730.1050717713469053No Hit
CACATTACTGATGGAC41630.10481998181576006No Hit
TGTAAGCACGCGCTGT41370.10416532903478246No Hit
TAGTACCGAACGAGCA41020.10328406567577414No Hit
GGGCCTTGACTATCTT41010.10325888672265962No Hit
AGGCGATGACCTGCGA40640.10232726545742227No Hit
ATGTCCAGACCGCTAG40560.10212583383250608No Hit
TGCGCAGACATCAGGG40390.10169779162955918No Hit
CATAGTCGAAGATTCC40290.10144600209841395No Hit
GCCATTCACCGGAAGT40150.10109349675481064No Hit
TCATCATTGGACTCGC40050.1008417072236654No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)