FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3546567
Sequences flagged as poor quality0
Sequence length8
%GC25

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGTTGAT346945497.82570017710084No Hit
AAGTTGAA147050.41462631327703664No Hit
AACTTGAT67340.18987375679072183No Hit
AATTTGAT63820.1799486658506663No Hit
AAGTTCAT62760.17695986005621775No Hit
AAGTTGCT61060.1721664922726682No Hit
AAGTAGAT58940.1661888806837711No Hit
AAGATGAT55080.15530511618700563No Hit
ATGTTGAT44150.12448658096688996No Hit
AAGTTTAT38090.10739963463258977No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)