FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004949283

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949283
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences17458929
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCCGGCA1717454698.37113147089379No Hit
ATCCGCCA409810.23472802942265245No Hit
ATCCCGCA299940.17179747967358136No Hit
ATCCGGAA266430.1526038624706017No Hit
ATACGGCA255720.14646946556687412No Hit
AACCGGCA206660.11836923101067655No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)