FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949287

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949287
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3127694
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA84780.27106232259293905No Hit
GGACACCTGGCTCCTT83070.26559503583151034No Hit
GGGGGGGGGGGGGGGG82270.26303724085540336No Hit
GTTAAGAGAGTACGTT59740.19100333984079004No Hit
CGCTTACTGATCACAC54750.17504909367732266No Hit
TTGTGGTGAAAGACAT49230.15740030834218438No Hit
TACCAGTGATACGATC49190.15727241859337904No Hit
ATAGATGGAGAGTAAT48280.1543629268080573No Hit
ATCTTACTGGTTTGGT47980.15340375369201717No Hit
ATTCCTAACTGCGTGC46720.14937522660464866No Hit
ATATGCCGAGAACAGC43870.1402630820022675No Hit
GCGGTTCGAAGCAAGC41740.1334529528783826No Hit
TGGAACACTTGAGGCA41160.13159855152070504No Hit
AGCTCTGCTGGCCTGT40390.12913667385620206No Hit
CTTGACGCTCAGGGTA40090.12817750074016193No Hit
AGGTAGCGATTGACCA39460.12616323719647765No Hit
CTTTCTGCTCTTGTGA38780.1239891114667867No Hit
GCTATACGACAGGTGA37740.12066397799784762No Hit
TGTGACTGACCGTTAA36330.11615586435245905No Hit
ACGCTCTTGCCTCAAA35700.11414160080877477No Hit
ACTGGAACTCTGGAAG35550.1136620142507547No Hit
AGTTCACGACCAGAGA34770.1111681641490504No Hit
TGTACCCTGCTGAGAG33560.10729949924768854No Hit
ACACTCCACCGTACAT33140.10595665688523238No Hit
ACCCTTTCTAGGTGAC32480.10384647602994411No Hit
TTCCAAACTCCGCTAG32410.10362266896953475No Hit
CACAGCTCTCTCTGGG32040.10243968879308527No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)