FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949288

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949288
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4624590
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGTACT452314297.80633526431532No Hit
ATCGTACA197230.4264810502120188No Hit
ATAGTACT138450.29937789079680577No Hit
ATCGAACT110610.23917795955965826No Hit
AACGTACT94070.20341262684908284No Hit
ATCCTACT62240.13458490374281828No Hit
ATCGTAAT60200.13017370188492383No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)