FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949299

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949299
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3143463
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAATGT307787497.91347949697516No Hit
GGTAATGA138380.44021513852715943No Hit
GGTATTGT62200.19787094678703077No Hit
GTTAATGT51050.1624005117922495No Hit
GGTAAAGT50120.15944199120524083No Hit
GGAAATGT44930.14293153760677316No Hit
GGTAATTT41870.133197050514035No Hit
GGTTATGT36950.11754552224727952No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)