FastQCFastQC Report
Wed 8 May 2024
EGAF00004949304

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949304
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3952358
Total Bases63.2 Mbp
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA159380.4032529441917964No Hit
CATTCAACTAGGCATG139590.3531815690785096No Hit
GTCGACCGATGCTCAA133400.3375200323452481No Hit
ACTGGGCACTTCTCGC112540.2847414125947093No Hit
TGTAAGCTGTTGTGAC110110.2785931841194548No Hit
GGGGGGGGGGGGGGGG105730.2675111920529466No Hit
GCTTTAGGAACTAGTC79000.1998806788251469No Hit
TAGTTGCGACATAGCT64290.16266239040086955No Hit
CATCAGTGATTCGCAA62660.15853827006561652No Hit
CAGGAGCCTCGTGCAC52120.1318706453210969No Hit
CAGGAGCCTTCCAATG47320.119725996481088No Hit
TCCTTAAACAGGGAGG44120.11162956392108206No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)