FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949306

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949306
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4048973
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTTAC395669497.7209282452612No Hit
CAGCATAC113840.2811577157960796No Hit
CAGCTTAA108640.26831495295226715No Hit
CAGCTAAC103880.256558885426008No Hit
CCGCTTAC96450.23820855313186826No Hit
AAGCTTAC79170.1955310642970452No Hit
CAGATTAC67990.16791912418284835No Hit
CACCTTAC66680.16468373585104173No Hit
CATCTTAC46580.11504151793553576No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)