FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949308

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949308
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3048046
Sequences flagged as poor quality0
Sequence length8
%GC74

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACAGGG297507097.60581041099773No Hit
GGACAGGA357621.1732762563294648No Hit
GGCCAGGG132090.4333596015283234ABI Solid3 GAPDH Forward Primer (100% over 8bp)

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)