FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949312

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949312
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2590980
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA98110.3786598121174227No Hit
GTCGACCGATGCTCAA91110.35164300766505335No Hit
CATTCAACTAGGCATG87830.33898370500737174No Hit
ACTGGGCACTTCTCGC71110.27445213780114086No Hit
GGGGGGGGGGGGGGGG70180.270862762352469No Hit
TGTAAGCTGTTGTGAC67170.2592455364379501No Hit
GCTTTAGGAACTAGTC63460.24492663007819435No Hit
NNNNNNNNNNNNNNNN50620.19537009162556251No Hit
CATCAGTGATTCGCAA38160.14728017970034504No Hit
TAGTTGCGACATAGCT37840.14604512578252243No Hit
CAGGAGCCTCGTGCAC32720.12628426309736082No Hit
CAGGAGCCTTCCAATG28450.10980401238141553No Hit
TCCTTAAACAGGGAGG27440.10590587345328795No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)