FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949317

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949317
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences831398
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCTAGTGAACGTAA44530.5356038864659285No Hit
CGACCAGACGCGCTGT40770.49037885585483726No Hit
TAGCTTTACCCTATCC38960.46860829590641306No Hit
GATGAATGACTCCTAC35230.4237441033055167No Hit
CCAGGACTGTAACTCG28600.343998903052449No Hit
ATCTGTACTGGGACTA26460.31825912499188114No Hit
CTTCCTTTGGCTCAGC26280.3160940969307119No Hit
GTTCTCGACCGTAGAG25940.3120045994818366No Hit
CGATCAAACCCGGCTA24480.2944438163190193No Hit
AGACCATTGAATCCAC22980.2764019158092755No Hit
GGGGGGGGGGGGGGGG22080.2655767755034291No Hit
TGCTGCTACTTTCTTG21300.25619498723836237No Hit
ACAGCCGACTTGCGTA20660.24849710968753835No Hit
AACTTACCTCACCTAA18200.21890839285155844No Hit
GGCAACAGAATAGCAA17860.2148188954026832No Hit
CGCGTTGGAGCGGTTC17370.20892520790283353No Hit
ATCGAAAGATTTCCGC16380.1970175535664026No Hit
GTAACTGTGTGAAAGT16310.19617559820928124No Hit
CCCTGAACTAGCTTTG15590.1875154859646042No Hit
CAATTCGGATAACGGG15040.1809001224443648No Hit
AGTGGAGTGAGTTGAA15000.1804190050974383No Hit
AAGAACCCTTAACCCA14030.1687519094344706No Hit
CGCGATCGATATCTGG13790.1658652053529116No Hit
TTTAGTCTGAGCAATA13780.16574492601617996No Hit
TTCCTAAACTAATGCC13680.16454213264886372No Hit
GTGAAGCGATCCCAGG13450.16177570790403634No Hit
TGGAACACTCCTAGTA13420.16141486989384146No Hit
GGGTAGAACCAGTCTA13020.15660369642457644No Hit
TGCAGATACTGCCACG12640.15203308162877466No Hit
CACATCCTGAGCCTAT12510.15046945025126354No Hit
CTTTAACTGTCCGTAA12430.14950721555741053No Hit
TGATAGAGAGACTGTT12170.14637995280238827No Hit
GCAACTTGAAGGTGCA11940.1436135280575609No Hit
AGTCCTGCTCGAACGA11890.14301213137390276No Hit
TGCAGTATGACACCGC11740.14120794132292835No Hit
CATAGGTACAAGGTGC11630.1398848686188805No Hit
CTTAGATCTTGTCACA11600.1395240306086856No Hit
ATTTCTGACGGGTAGT11340.13639676785366336No Hit
TCTCAGAGATGCATGT11280.1356750918332736No Hit
AGGTGTGGATCATGTG11100.13351006377210434No Hit
CTATTGGGACTTGTGA11060.13302894642517785No Hit
TCAAAGCACTCTGCAA10910.13122475637420344No Hit
TCTATGGGATGCTCAA10780.12966112499669233No Hit
CGAGTCTCTGCTACGC10760.12942056632322907No Hit
TGAACTGTGAACGTAA10560.12701497958859656No Hit
AGAGTACCTTAATCGC10520.12653386224167007No Hit
ATGTACGTGTACTTTC10380.12484995152742731No Hit
TGGCAATTGAGTGGTG10370.12472967219069567No Hit
TACGTTTACTGCACCG10370.12472967219069567No Hit
GGTCTAAACTCCTACC10230.12304576147645291No Hit
TCCATTTGAAATCTGC10140.12196324744586828No Hit
CACCAGGTGCGCCACA10140.12196324744586828No Hit
CATTCTATGCCTAGCG10030.12064017474182041No Hit
TTCTTAGACGTCCCGA10010.12039961606835717No Hit
CTACAACGAATCTGTG9990.1201590573948939No Hit
TCCGGGAACGTTCTCC9700.11667095662967676No Hit
TTGCGGTCTTTTGGGT9350.11246117984406988No Hit
TACTGTTTGCTTAAGC9310.11198006249714336No Hit
CTTTCGTCTCGAACGA9290.11173950382368011No Hit
AGCCAATTGTTATGGC9280.1116192244869485No Hit
GCATGATACTTGCGTA9260.11137866581348524No Hit
GAGTGTTACACCTGCG9150.11005559310943736No Hit
CTAGCTCACGAATAGT9120.1096947550992425No Hit
CTCAATTTGGAATCTC9080.10921363775231598No Hit
CACATTACTGATGGAC9060.10897307907885273No Hit
TCGGACCGATAGGCGA9020.10849196173192623No Hit
TGCTAGTGAAGGCGTA8980.10801084438499974No Hit
GTAATCTCTACACAAA8970.10789056504826809No Hit
GGTCGCATGGTACTAC8920.10728916836460997No Hit
ATGTCCAGACCGCTAG8880.10680805101768347No Hit
CATAGTCGAAGATTCC8820.1060863749972937No Hit
CGAGTCTCTTGGAACG8820.1060863749972937No Hit
GGGTGTGCTCGCAAAG8800.10584581632383046No Hit
GGGATGTGACTGGAAG8790.10572553698709884No Hit
TGCGCAGACATCAGGG8780.10560525765036721No Hit
ACCAAGTTGAAGCTAA8760.10536469897690397No Hit
AGCTTGTGATTGCGTA8730.10500386096670908No Hit
TGTAAGCACGCGCTGT8730.10500386096670908No Hit
TAGTACCGAACGAGCA8660.1041619056095877No Hit
CAATGTGTGACCGTTA8570.10307939157900307No Hit
ACCTCAGCTAATCCGT8550.10283883290553983No Hit
AAAGCCTTGAACCAAA8520.10247799489534494No Hit
CTAACAGTGCATGATC8510.10235771555861332No Hit
TCGTTGCTGTATTGCG8470.1018765982116868No Hit
AGACTACTGGCCCTAG8460.1017563188749552No Hit
AGGCGATGACCTGCGA8460.1017563188749552No Hit
ATAGCCAACCGTTCTC8440.10151576020149194No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)