FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949320

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949320
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2995152
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCTACC292471097.64813271580208No Hit
AGGCTACA156990.5241470215868844No Hit
AGGCAACC72250.24122314994364227No Hit
AGGCTCCC71820.23978749659449672No Hit
CGGCTACC48120.16065962595554417No Hit
AGGATACC36150.12069504318979471No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)