FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949322

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949322
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3267755
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT91360.2795803234942644No Hit
TCGCGGTGAGTCTTGA88920.2721134234359675No Hit
GGGGGGGGGGGGGGGG76000.232575575586297No Hit
GTTAAGAGAGTACGTT61700.18881464491677008No Hit
CGCTTACTGATCACAC55190.16889271074483858No Hit
TACCAGTGATACGATC52010.1591612590295172No Hit
TTGTGGTGAAAGACAT50600.154846370061403No Hit
ATCTTACTGGTTTGGT50310.15395891062824477No Hit
ATAGATGGAGAGTAAT49220.15062328724154658No Hit
ATTCCTAACTGCGTGC47550.14551274498853187No Hit
ATATGCCGAGAACAGC46770.14312578513383042No Hit
TGGAACACTTGAGGCA44010.1346796194941175No Hit
CTTGACGCTCAGGGTA42250.1292936587963296No Hit
CTTTCTGCTCTTGTGA42150.1289876383021371No Hit
AGCTCTGCTGGCCTGT40850.12500937187763464No Hit
AGGTAGCGATTGACCA39730.12158194234267869No Hit
TGTGACTGACCGTTAA37310.11417624638322028No Hit
ACTGGAACTCTGGAAG37150.1136866135925123No Hit
GCTATACGACAGGTGA36880.11286035825819256No Hit
GCGGTTCGAAGCAAGC36780.11255433776400006No Hit
ACGCTCTTGCCTCAAA36010.11019797995871783No Hit
ACCCTTTCTAGGTGAC34980.10704596886853514No Hit
TGTACCCTGCTGAGAG34300.10496502950802615No Hit
AGTTCACGACCAGAGA33810.10346552908648292No Hit
ACATGTGTGTCAATGC33460.10239445735680919No Hit
TTCCAAACTCCGCTAG33140.1014151917753932No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)