FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7142167
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGGAAGA700170298.03329997744382No Hit
CAGGAAGC290470.40669729509265184No Hit
AAGGAAGA167180.23407461628942589No Hit
CAGGAACA122260.171180539463723No Hit
CAGGAAAA110750.15506498237859742No Hit
CAGCAAGA96360.1349170356839878No Hit
CACGAAGA88930.12451403054563133No Hit
CAGGAATA78150.10942057221568749No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)