FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949335

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949335
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3127694
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTTGG303515297.04120671651383No Hit
CTATTTGA219320.7012194926997334No Hit
CGATTTGG62760.20065901587559398No Hit
CTTTTTGG61830.1976855792158696No Hit
CTAATTGG60260.1926659065752596No Hit
CTATATGG59860.1913870090872061No Hit
CTATTTTG58180.1860156396373814No Hit
CTATTTGC57450.18368165172168377No Hit
CAATTTGG48650.1555459069845068No Hit
ATATTTGG44700.1429167942899785No Hit
CTATTTCG42150.13476382280363744No Hit
CTATTAGG39270.12555576088965223No Hit
CTAGTTGG38570.12331769028555861No Hit
CTATTTGT35940.11490893930160688No Hit
GTATTTGG31780.10160840542585048No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)