FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949339

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949339
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences876666
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA35700.40722464427729604No Hit
CATTCAACTAGGCATG31840.3631941925431122No Hit
GTCGACCGATGCTCAA31780.36250978137625955No Hit
GGGGGGGGGGGGGGGG28900.3296580453673349No Hit
ACTGGGCACTTCTCGC26210.2989736113867767No Hit
TGTAAGCTGTTGTGAC24650.28117892104860914No Hit
GCTTTAGGAACTAGTC21810.24878345915091948No Hit
TAGTTGCGACATAGCT15030.1714449972965759No Hit
CATCAGTGATTCGCAA14310.1632320632943447No Hit
CAGGAGCCTCGTGCAC12140.1384791927598424No Hit
CAGGAGCCTTCCAATG10500.11977195419920472No Hit
TCCTTAAACAGGGAGG9680.11041833491888588No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)