FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949341

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949341
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3005966
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTATG292978997.46580633313883No Hit
CCGTTATA114830.3820069821149008No Hit
CCGGTATG105710.35166731759441056No Hit
ACGTTATG62650.2084188576983239No Hit
CCGTTTTG54710.18200471994693218No Hit
CCGATATG48880.16260995633350478No Hit
CCGTTATC41760.13892372701487643No Hit
CCGTTAAG40810.135763345293992No Hit
CCCTTATG35600.11843114659314177No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)