FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004949344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1169915
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATCCTT112629396.27135304701623No Hit
TCCTCCTT119701.0231512545783241No Hit
TCATCCTA99540.8508310432809221No Hit
TCATACTT31490.26916485385690414No Hit
TAATCCTT28640.24480410970027736No Hit
ACATCCTT26170.2236914647645342No Hit
TCAACCTT26150.22352051217396138No Hit
TCATCCAT23760.20309167760050942No Hit
TCATCATT20410.17445711867956218No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)