FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949351

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949351
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1169915
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA47770.4083202625831791No Hit
CATTCAACTAGGCATG41830.35754734318305176No Hit
GTCGACCGATGCTCAA40310.3445549462995175No Hit
GGGGGGGGGGGGGGGG34260.2928417876512396No Hit
TGTAAGCTGTTGTGAC33450.28591820773304044No Hit
ACTGGGCACTTCTCGC33040.2824136796262976No Hit
GCTTTAGGAACTAGTC25710.2197595551813593No Hit
CATCAGTGATTCGCAA19020.16257591363475124No Hit
TAGTTGCGACATAGCT18670.1595842432997269No Hit
CAGGAGCCTCGTGCAC16180.1383006457734109No Hit
CAGGAGCCTTCCAATG13890.11872657415282306No Hit
TCCTTAAACAGGGAGG12890.1101789446241821No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)