FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949355

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949355
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences843169
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA33280.3947014181024207No Hit
GTCGACCGATGCTCAA30500.36173056647006707No Hit
CATTCAACTAGGCATG29170.34595674176825764No Hit
GGGGGGGGGGGGGGGG27880.3306573178093597No Hit
ACTGGGCACTTCTCGC25080.29744926580555026No Hit
TGTAAGCTGTTGTGAC24090.28570784741848904No Hit
GCTTTAGGAACTAGTC19860.23553996885559123No Hit
TAGTTGCGACATAGCT14050.16663326094768666No Hit
CATCAGTGATTCGCAA13040.15465464218916966No Hit
CAGGAGCCTCGTGCAC11850.14054122008755066No Hit
CAGGAGCCTTCCAATG10170.120616388885265No Hit
TCCTTAAACAGGGAGG8550.10140315879734667No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)