FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949357

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949357
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2570852
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT78300.3045682909790217No Hit
TCGCGGTGAGTCTTGA69500.2703383936531547No Hit
GGGGGGGGGGGGGGGG61150.23785888880417855No Hit
GTTAAGAGAGTACGTT48980.19052049670692828No Hit
CGCTTACTGATCACAC46310.18013483467737543No Hit
ATCTTACTGGTTTGGT41660.1620474457495025No Hit
TTGTGGTGAAAGACAT41450.16123059592695338No Hit
TACCAGTGATACGATC41120.15994697477723338No Hit
ATAGATGGAGAGTAAT39810.1548513877889509No Hit
ATTCCTAACTGCGTGC38980.1516228861093521No Hit
ATATGCCGAGAACAGC37960.1476553298283993No Hit
GCGGTTCGAAGCAAGC36880.14345438788386108No Hit
TGGAACACTTGAGGCA36440.14174289301756773No Hit
CTTGACGCTCAGGGTA34220.13310762346490582No Hit
CTTTCTGCTCTTGTGA33890.1318240023151858No Hit
GCTATACGACAGGTGA33840.1316295142621979No Hit
AGGTAGCGATTGACCA33620.13077376682905123No Hit
AGCTCTGCTGGCCTGT32770.12746746992825725No Hit
AGTTCACGACCAGAGA30650.11922117648157109No Hit
ACTGGAACTCTGGAAG30180.11739298878348502No Hit
TGTGACTGACCGTTAA29800.1159148795807771No Hit
ACCCTTTCTAGGTGAC29220.1136588181661177No Hit
ACGCTCTTGCCTCAAA28750.1118306304680316No Hit
TGTACCCTGCTGAGAG28040.1090689001156037No Hit
ACACTCCACCGTACAT27580.10727961002811519No Hit
TTCCAAACTCCGCTAG27500.10696842914333457No Hit
ACATGTGTGTCAATGC27400.10657945303735883No Hit
TCAGTCCACCCAGCAC27040.10517913905584608No Hit
TCCCAGACTCCTAACA26640.10362323463194303No Hit
CACAGCTCTCTCTGGG26570.10335095135775998No Hit
GGGAGCTCTTGATGAA26550.10327315613656485No Hit
CAGTGGAGAGATCATC26070.1014060708278812No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)