FastQCFastQC Report
Mon 5 Sep 2022
EGAF00004949361

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949361
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16387455
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTCAGAC1611460798.3350190740417No Hit
ACTCAGCC669580.40859303656363966No Hit
ACACAGAC471320.28761024820510567No Hit
ACTCAGAA297990.1818403162663147No Hit
ACTCACAC186270.11366621601706915No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)