FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2760052
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCGGTGAGTCTTGA78390.28401638809703583No Hit
GGGGGGGGGGGGGGGG70720.2562270565916874No Hit
GGACACCTGGCTCCTT49350.17880097911198775No Hit
CGCTTACTGATCACAC48610.17611987020534395No Hit
GTTAAGAGAGTACGTT47930.17365614850734695No Hit
TACCAGTGATACGATC47310.17140981401799676No Hit
ATCTTACTGGTTTGGT46680.16912724832720544No Hit
TTGTGGTGAAAGACAT45430.1645983481470639No Hit
ATAGATGGAGAGTAAT45420.16456211694562276No Hit
ATTCCTAACTGCGTGC43090.15612024700983895No Hit
ATATGCCGAGAACAGC40800.14782330187981965No Hit
TGGAACACTTGAGGCA39590.14343932650544264No Hit
CTTTCTGCTCTTGTGA37320.13521484377830562No Hit
AGCTCTGCTGGCCTGT37130.1345264509509241No Hit
CTTGACGCTCAGGGTA36530.13235257886445617No Hit
ACTGGAACTCTGGAAG34550.125178800979112No Hit
TGTGACTGACCGTTAA34120.12362085931714328No Hit
TGTACCCTGCTGAGAG32510.117787635885121No Hit
AGTTCACGACCAGAGA32310.11706301185629836No Hit
ACCCTTTCTAGGTGAC31170.1129326548920093No Hit
ACGCTCTTGCCTCAAA30870.11184571884877532No Hit
AGGTAGCGATTGACCA29780.10789651789169188No Hit
TTCCAAACTCCGCTAG29610.10728058746719266No Hit
GCGGTTCGAAGCAAGC29150.10561395220090057No Hit
ACATGTGTGTCAATGC29130.1055414897980183No Hit
ACACTCCACCGTACAT29020.10514294658216583No Hit
TCAGTCCACCCAGCAC28730.104092241740373No Hit
TCCCAGACTCCTAACA28450.10307776810002131No Hit
CACAGCTCTCTCTGGG28440.10304153689858017No Hit
CAGTGGAGAGATCATC27790.10068650880490657No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)