FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004949365

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949365
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences843169
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTGGACG82921898.3454088089102No Hit
ATTGGCCG31070.36849077705655686No Hit
ATTGGACA17740.21039672948127836No Hit
ATTGAACG11150.13223920708659828No Hit
ATAGGACG9920.11765138424206772No Hit
ATTGGACC9070.10757036845519699No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)