FastQCFastQC Report
Sat 10 Sep 2022
EGAF00004949367

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949367
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18458074
Sequences flagged as poor quality0
Sequence length8
%GC24

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTATTAG1809399598.02753526722235No Hit
TCAATTAG413530.22403745916285742No Hit
ACTATTAG394920.21395515046694472No Hit
TCTATTAA385460.20883002202721693No Hit
TCTAATAG375370.2033635795370633No Hit
TCTTTTAG266830.14456004456369606No Hit
TCTATAAG248100.13441272366770227No Hit
TCTATTAT228690.12389700030458217No Hit
TCTATTAC202880.10991395960380265No Hit
TATATTAG195600.1059698861322151No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)