FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949368

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949368
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4757844
Sequences flagged as poor quality0
Sequence length8
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AGGCTACC464234097.57234579359894No Hit
AGGCTACA236730.4975572969605561No Hit
AGGCAACC140930.29620559228087345No Hit
AGGCTCCC118610.24929358759976156No Hit
ACGCTACC75720.15914771480527734No Hit
AGTCTACC71020.14926929088049126No Hit
AGGATACC60680.12753675824596183No Hit
CGGCTACC55480.11660743815896445No Hit
AGCCTACC53790.11305540913069027No Hit
AGGCTAAC48910.10279866258750812No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)