FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949373

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949373
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1117567
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGGCCGATGGTTAGAA43490.38914892798373607No Hit
CATTCAACTAGGCATG40420.36167853918378046No Hit
GTCGACCGATGCTCAA38680.3461090028606786No Hit
GGGGGGGGGGGGGGGG33730.3018163564242681No Hit
ACTGGGCACTTCTCGC31780.2843677381311367No Hit
TGTAAGCTGTTGTGAC31770.2842782580373257No Hit
GCTTTAGGAACTAGTC25890.23166396287649868No Hit
TAGTTGCGACATAGCT19340.1730545014303393No Hit
CATCAGTGATTCGCAA17270.15453212201147673No Hit
CAGGAGCCTCGTGCAC16110.1441524311294088No Hit
CAGGAGCCTTCCAATG13950.12482473086624785No Hit
TCCTTAAACAGGGAGG13030.11659256223564224No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)