FastQCFastQC Report
Sun 4 Sep 2022
EGAF00004949378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3126832
Sequences flagged as poor quality0
Sequence length16
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACACCTGGCTCCTT87570.28005981773245253No Hit
TCGCGGTGAGTCTTGA85170.272384317417757No Hit
GGGGGGGGGGGGGGGG77280.2471511101331955No Hit
GTTAAGAGAGTACGTT58590.18737815143250422No Hit
CGCTTACTGATCACAC52500.16790156938396433No Hit
TTGTGGTGAAAGACAT49640.1587549315089522No Hit
ATCTTACTGGTTTGGT48950.15654822516847725No Hit
TACCAGTGATACGATC48740.15587661889094137No Hit
ATAGATGGAGAGTAAT47680.15248660625195087No Hit
ATTCCTAACTGCGTGC46530.14880876235115925No Hit
ATATGCCGAGAACAGC44840.14340393087956116No Hit
TGGAACACTTGAGGCA41330.132178511669319No Hit
CTTTCTGCTCTTGTGA40730.1302596365906451No Hit
AGGTAGCGATTGACCA40570.1297479365696654No Hit
AGCTCTGCTGGCCTGT38970.12463093635986838No Hit
CTTGACGCTCAGGGTA38910.124439048852001No Hit
GCTATACGACAGGTGA38020.12159271748530141No Hit
GCGGTTCGAAGCAAGC36380.11634779227025949No Hit
TGTGACTGACCGTTAA35760.11436495468896316No Hit
ACTGGAACTCTGGAAG34570.11055918578292662No Hit
ACGCTCTTGCCTCAAA34210.1094078607357223No Hit
ACCCTTTCTAGGTGAC33450.1069772856360687No Hit
TTCCAAACTCCGCTAG33260.10636964186115533No Hit
TGTACCCTGCTGAGAG32930.10531426056788469No Hit
AGTTCACGACCAGAGA32550.1040989730180579No Hit
TCCCAGACTCCTAACA31720.1014445291592257No Hit
TCAGTCCACCCAGCAC31370.10032518536333261No Hit
ACACTCCACCGTACAT31320.10016527910677644No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)