FastQCFastQC Report
Sat 3 Sep 2022
EGAF00004949380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4756209
Sequences flagged as poor quality0
Sequence length8
%GC75

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTCGAGC461135796.9544652053768No Hit
GGTCGCGC534361.1234998293809206No Hit
GGTCGAGA111840.23514525959645594No Hit
GGTCGACC97400.20478494532094782No Hit
GGACGAGC90070.18937351155090115No Hit
GGTCCAGC87760.18451670227275546No Hit
GGTAGAGC80850.1699883247350989No Hit
CGTCGAGC64000.13456094969754273No Hit
GCTCGAGC56740.11929669196622773No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)