FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949393

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949393
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2760052
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGAA266753296.64788924266644No Hit
ACCGCGAA255550.9258883528281352No Hit
AACGCCAA84330.3055377217530684No Hit
AACGCAAA65990.23908969831003185No Hit
AACCCGAA64330.23307531887080388No Hit
AACGAGAA59330.21495971815023773No Hit
AACGCGAT48930.17727926865146018No Hit
AAAGCGAA37080.13434529494371844No Hit
AACGCTAA36260.1313743364255456No Hit
AACGCGCA34310.12430925214452482No Hit
AACTCGAA29610.10728058746719266No Hit
CACGCGAA28970.10496179057496019No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)