FastQCFastQC Report
Thu 1 Sep 2022
EGAF00004949396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1110494
Sequences flagged as poor quality0
Sequence length8
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATCCTT106054395.5019117617925No Hit
TCCTCCTT151431.3636273586349859No Hit
TCATCCTA96060.8650204323481261No Hit
TCATACTT36840.33174425075687036No Hit
TAATCCTT31600.2845580435373807No Hit
ACATCCTT27440.24709723780587742No Hit
TCAACCTT27350.24628678768187853No Hit
TCATCCAT25250.22737628478857155No Hit
TCATCATT24440.22008223367258176No Hit
TCATCCGT13000.11706501791094773No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)