FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2548370
Sequences flagged as poor quality0
Sequence length8
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGAA248788597.62652205135048No Hit
ACCGCGAA115700.4540157041559899No Hit
AACGCAAA62940.2469814037992913No Hit
AACGCCAA50400.19777347873346493No Hit
AACGAGAA37800.1483301090500987No Hit
AACCCGAA37310.14640731134019No Hit
AACGCGAT35590.13965789897071462No Hit
AAAGCGAA28370.11132606332675396No Hit
GACGCGAA25960.10186903785557042No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)