FastQCFastQC Report
Fri 2 Sep 2022
EGAF00004949406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00004949406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2289487
Sequences flagged as poor quality0
Sequence length8
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACGCGAA225119098.32726720003214No Hit
ACCGCGAA57950.25311347039751697No Hit
AACGCAAA53850.23520552857474183No Hit
AACGCCAA27330.11937171951620602No Hit
AACACGAA22980.10037183002131046No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)